/* Copyright (C) 2018 Paul Brossier This file is part of aubio. aubio is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. aubio is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with aubio. If not, see . */ #include "aubio_priv.h" #ifdef HAVE_HDF5 #include "fmat.h" #include "ai/tensor.h" #include "file_hdf5.h" #include #include struct _aubio_file_hdf5_t { const char_t *path; hid_t fid; hid_t datatype; }; aubio_file_hdf5_t *new_aubio_file_hdf5(const char_t *path) { aubio_file_hdf5_t *f = AUBIO_NEW(aubio_file_hdf5_t); f->fid = H5Fopen(path, H5F_ACC_RDONLY, H5P_DEFAULT); if (f->fid <= 0) goto failure; f->path = path; return f; failure: del_aubio_file_hdf5(f); return NULL; } uint_t aubio_file_hdf5_load_dataset_into_tensor (aubio_file_hdf5_t *f, const char_t *key, aubio_tensor_t *tensor) { uint_t i; AUBIO_ASSERT(f && key && tensor); // check file is open if (!f->fid) return AUBIO_FAIL; // find key in file hid_t data_id = H5Dopen(f->fid, key, H5P_DEFAULT); if (data_id <= 0) { AUBIO_ERR("file_hdf5: failed getting key %s in %s\n", key, f->path); return AUBIO_FAIL; } // get dimensions hsize_t shape[10]; hid_t space = H5Dget_space(data_id); int ndim = H5Sget_simple_extent_dims(space, shape, NULL); if (ndim <= 0) { AUBIO_ERR("file_hdf5: failed to get dims of %s in %s\n", key, f->path); return AUBIO_FAIL; } // check output tensor dimension matches AUBIO_ASSERT(ndim == (sint_t)tensor->ndim); for (i = 0; i < (uint_t)ndim; i++) { //AUBIO_DBG("file_hdf5: found dim %d : %d %d (%s in %s)\n", i, dims[i], // tensor->shape[i], key, f->path); AUBIO_ASSERT(shape[i] == tensor->shape[i]); } if (ndim != (sint_t)tensor->ndim) return AUBIO_FAIL; for (i = 0; i < (uint_t)ndim; i++) { if (shape[i] != tensor->shape[i]) return AUBIO_FAIL; } // read data from hdf5 file into tensor buffer smpl_t *buffer = tensor->buffer; herr_t err = H5LTread_dataset_float(f->fid, key, buffer); if (err < 0) { return AUBIO_FAIL; } H5Dclose(data_id); return AUBIO_OK; } uint_t aubio_file_hdf5_load_dataset_into_matrix(aubio_file_hdf5_t *f, const char_t *key, fmat_t *mat) { aubio_tensor_t t; if (aubio_fmat_as_tensor (mat, &t)) return AUBIO_FAIL; return aubio_file_hdf5_load_dataset_into_tensor(f, key, &t); } uint_t aubio_file_hdf5_load_dataset_into_vector(aubio_file_hdf5_t *f, const char_t *key, fvec_t *vec) { aubio_tensor_t t; if (aubio_fvec_as_tensor (vec, &t)) return AUBIO_FAIL; return aubio_file_hdf5_load_dataset_into_tensor(f, key, &t); } void del_aubio_file_hdf5(aubio_file_hdf5_t *f) { AUBIO_ASSERT(f); if (f->fid > 0) H5Fclose(f->fid); AUBIO_FREE(f); } #endif /* HAVE_HDF5 */